Galaxy – A server for bioinformatics analysis tools. Allows many tools to be chained together into complex workflows
CPT Galaxy – Galaxy instance
Online analysis tools – A useful repository of links to online bioinformatic tools for DNA and protein sequence analysis.
PhAnToMe – A collection of genome annotation tools and methods.
PHAST – A tool that locates and annotates putative prophage elements within prokaryotic genomes. Can analyze both annotated genomes (GenBank format) or raw FASTA format DNA sequence.
Prophinder – Analyzes annotated sequences for the presence of putative prophage elements; also contains a database of pre-analyzed genomes present in the NCBI database.
Viral Bioinformatics Resource Center – A suite of Java-based tools for analysis of viral genomes.