Publications

The latest publications from the CPT

  1. Schooley, RT, Biswas, B, Gill, JJ, Hernandez-Morales, A, Lancaster, J, Lessor, L et al.. Development and use of personalized bacteriophage-based therapeutic cocktails to treat a patient with a disseminated resistant Acinetobacter baumannii infection. Antimicrob. Agents Chemother. 2017; :. doi: 10.1128/AAC.00954-17. PubMed PMID:28807909 .
  2. Chamakura, KR, Edwards, GB, Young, R. Mutational analysis of the MS2 lysis protein L. Microbiology (Reading, Engl.). 2017;163 (7):961-969. doi: 10.1099/mic.0.000485. PubMed PMID:28691656 .
  3. Weaver, J, Jiang, M, Roth, A, Puchalla, J, Zhang, J, Rye, HS et al.. GroEL actively stimulates folding of the endogenous substrate protein PepQ. Nat Commun. 2017;8 :15934. doi: 10.1038/ncomms15934. PubMed PMID:28665408 PubMed Central PMC5497066.
  4. Trinh, JT, Zeng, L. Virus interactions: cooperation or competition?. Future Microbiol. 2017;12 :561-564. doi: 10.2217/fmb-2017-0048. PubMed PMID:28604103 .
  5. Piya, D, Vara, L, Russell, WK, Young, R, Gill, JJ. The multicomponent antirestriction system of phage P1 is linked to capsid morphogenesis. Mol. Microbiol. 2017;105 (3):399-412. doi: 10.1111/mmi.13705. PubMed PMID:28509398 .
  6. Cahill, J, Rajaure, M, Holt, A, Moreland, R, O'Leary, C, Kulkarni, A et al.. Suppressor Analysis of the Fusogenic Lambda Spanins. J. Virol. 2017;91 (14):. doi: 10.1128/JVI.00413-17. PubMed PMID:28468876 PubMed Central PMC5487574.
  7. Chamakura, KR, Tran, JS, Young, R. MS2 Lysis of Escherichia coli Depends on Host Chaperone DnaJ. J. Bacteriol. 2017;199 (12):. doi: 10.1128/JB.00058-17. PubMed PMID:28396351 PubMed Central PMC5446614.
  8. Sperber, AM, Herman, JK. Metabolism Shapes the Cell. J. Bacteriol. 2017;199 (11):. doi: 10.1128/JB.00039-17. PubMed PMID:28320879 PubMed Central PMC5424247.
  9. Yao, GW, Duarte, I, Le, TT, Carmody, L, LiPuma, JJ, Young, R et al.. A Broad-Host-Range Tailocin from Burkholderia cenocepacia. Appl. Environ. Microbiol. 2017;83 (10):. doi: 10.1128/AEM.03414-16. PubMed PMID:28258146 PubMed Central PMC5411513.
  10. Trinh, JT, Székely, T, Shao, Q, Balázsi, G, Zeng, L. Cell fate decisions emerge as phages cooperate or compete inside their host. Nat Commun. 2017;8 :14341. doi: 10.1038/ncomms14341. PubMed PMID:28165024 PubMed Central PMC5303824.
  11. Cahill, J, Rajaure, M, O'Leary, C, Sloan, J, Marrufo, A, Holt, A et al.. Genetic Analysis of the Lambda Spanins Rz and Rz1: Identification of Functional Domains. G3 (Bethesda). 2017;7 (2):741-753. doi: 10.1534/g3.116.037192. PubMed PMID:28040784 PubMed Central PMC5295617.
  12. Duan, Y, Huey, JD, Herman, JK. The DnaA inhibitor SirA acts in the same pathway as Soj (ParA) to facilitate oriC segregation during Bacillus subtilis sporulation. Mol. Microbiol. 2016;102 (3):530-544. doi: 10.1111/mmi.13477. PubMed PMID:27489185 .
  13. Bhowmick, TS, Das, M, Heinz, KM, Krauter, PC, Gonzalez, CF. Transmission of phage by glassy-winged sharpshooters, a vector of Xylella fastidiosa. Bacteriophage. ;6 (3):e1218411. doi: 10.1080/21597081.2016.1218411. PubMed PMID:27738554 PubMed Central PMC5056766.
  14. Gorzelnik, KV, Cui, Z, Reed, CA, Jakana, J, Young, R, Zhang, J et al.. Asymmetric cryo-EM structure of the canonical Allolevivirus Qβ reveals a single maturation protein and the genomic ssRNA in situ. Proc. Natl. Acad. Sci. U.S.A. 2016;113 (41):11519-11524. doi: 10.1073/pnas.1609482113. PubMed PMID:27671640 PubMed Central PMC5068298.
  15. Lee, JR, Xie, X, Yang, K, Zhang, J, Lee, SY, Shippen, DE et al.. Dynamic interactions of Arabidopsis TEN1: stabilizing telomeres in response to heat stress. Plant Cell. 2016; :. doi: 10.1105/tpc.16.00408. PubMed PMID:27609839 PubMed Central PMC5059806.
  16. Shao, Q, Trinh, JT, McIntosh, CS, Christenson, B, Balázsi, G, Zeng, L et al.. Lysis-lysogeny coexistence: prophage integration during lytic development. Microbiologyopen. 2017;6 (1):. doi: 10.1002/mbo3.395. PubMed PMID:27530202 PubMed Central PMC5300877.
  17. Xie, Y, Savell, JW, Arnold, AN, Gehring, KB, Gill, JJ, Taylor, TM et al.. Prevalence and Characterization of Salmonella enterica and Salmonella Bacteriophages Recovered from Beef Cattle Feedlots in South Texas. J. Food Prot. 2016;79 (8):1332-40. doi: 10.4315/0362-028X.JFP-15-526. PubMed PMID:27497120 .
  18. Chen, Y, Young, R. The Last r Locus Unveiled: T4 RIII Is a Cytoplasmic Antiholin. J. Bacteriol. 2016;198 (18):2448-57. doi: 10.1128/JB.00294-16. PubMed PMID:27381920 PubMed Central PMC4999926.
  19. Duan, Y, Sperber, AM, Herman, JK. YodL and YisK Possess Shape-Modifying Activities That Are Suppressed by Mutations in Bacillus subtilis mreB and mbl. J. Bacteriol. 2016;198 (15):2074-88. doi: 10.1128/JB.00183-16. PubMed PMID:27215790 PubMed Central PMC4944218.
  20. Hand, S, Gill, J, Chu, KH. Phage-based extraction of polyhydroxybutyrate (PHB) produced from synthetic crude glycerol. Sci. Total Environ. 2016;557-558 :317-21. doi: 10.1016/j.scitotenv.2016.03.089. PubMed PMID:27016679 .
  21. Fan, X, Duan, X, Tong, Y, Huang, Q, Zhou, M, Wang, H et al.. The Global Reciprocal Reprogramming between Mycobacteriophage SWU1 and Mycobacterium Reveals the Molecular Strategy of Subversion and Promotion of Phage Infection. Front Microbiol. 2016;7 :41. doi: 10.3389/fmicb.2016.00041. PubMed PMID:26858712 PubMed Central PMC4729954.
  22. Klionsky, DJ, Abdelmohsen, K, Abe, A, Abedin, MJ, Abeliovich, H, Acevedo Arozena, A et al.. Guidelines for the use and interpretation of assays for monitoring autophagy (3rd edition). Autophagy. 2016;12 (1):1-222. doi: 10.1080/15548627.2015.1100356. PubMed PMID:26799652 PubMed Central PMC4835977.
  23. Young, R, Gill, JJ. MICROBIOLOGY. Phage therapy redux--What is to be done?. Science. 2015;350 (6265):1163-4. doi: 10.1126/science.aad6791. PubMed PMID:26785457 .
  24. Yang, K, Ren, Z, Raushel, FM, Zhang, J. Structures of the Carbon-Phosphorus Lyase Complex Reveal the Binding Mode of the NBD-like PhnK. Structure. 2016;24 (1):37-42. doi: 10.1016/j.str.2015.11.009. PubMed PMID:26724995 PubMed Central PMC4706772.
  25. Ababneh, QO, Tindall, AJ, Herman, JK. A Secreted Factor Coordinates Environmental Quality with Bacillus Development. PLoS ONE. 2015;10 (12):e0144168. doi: 10.1371/journal.pone.0144168. PubMed PMID:26657919 PubMed Central PMC4689505.
  26. Miller, AK, Brown, EE, Mercado, BT, Herman, JK. A DNA-binding protein defines the precise region of chromosome capture during Bacillus sporulation. Mol. Microbiol. 2016;99 (1):111-22. doi: 10.1111/mmi.13217. PubMed PMID:26360512 .
  27. Liu, M, Gill, JJ, Young, R, Summer, EJ. Bacteriophages of wastewater foaming-associated filamentous Gordonia reduce host levels in raw activated sludge. Sci Rep. 2015;5 :13754. doi: 10.1038/srep13754. PubMed PMID:26349678 PubMed Central PMC4563357.
  28. Liu, M, Bischoff, KM, Gill, JJ, Mire-Criscione, MD, Berry, JD, Young, R et al.. Bacteriophage application restores ethanol fermentation characteristics disrupted by Lactobacillus fermentum. Biotechnol Biofuels. 2015;8 :132. doi: 10.1186/s13068-015-0325-9. PubMed PMID:26339290 PubMed Central PMC4558781.
  29. Li, X, Sun, Q, Jiang, C, Yang, K, Hung, LW, Zhang, J et al.. Structure of Ribosomal Silencing Factor Bound to Mycobacterium tuberculosis Ribosome. Structure. 2015;23 (10):1858-65. doi: 10.1016/j.str.2015.07.014. PubMed PMID:26299947 PubMed Central PMC4718548.
  30. Ababneh, QO, Herman, JK. CodY Regulates SigD Levels and Activity by Binding to Three Sites in the fla/che Operon. J. Bacteriol. 2015;197 (18):2999-3006. doi: 10.1128/JB.00288-15. PubMed PMID:26170408 PubMed Central PMC4542168.
Search PubMed

Phage Genome Announcements from the CPT

  1. Parvataneni, S, Mijalis, EM, Kuty Everett, GF, Rasche, ES, Liu, M, Gill, JJ et al.. Complete Genome Sequence of Citrobacter freundii Myophage Mijalis. Genome Announc. 2017;5 (31):. doi: 10.1128/genomeA.00228-17. PubMed PMID:28774966 PubMed Central PMC5543628.
  2. Lerma, RA, Tidwell, TJ, Cahill, JL, Rasche, ES, Kuty Everett, GF. Complete Genome Sequence of Caulobacter crescentus Podophage Percy. Genome Announc. 2015;3 (6):. doi: 10.1128/genomeA.01373-15. PubMed PMID:26607888 PubMed Central PMC4661307.
  3. Guan, J, Snowden, JD, Cahill, JL, Rasche, ES, Kuty Everett, GF. Complete Genome Sequence of Citrobacter freundii Myophage Mordin. Genome Announc. 2015;3 (5):. doi: 10.1128/genomeA.01203-15. PubMed PMID:26472844 PubMed Central PMC4611695.
  4. Vara, L, Kane, AA, Cahill, JL, Rasche, ES, Kuty Everett, GF. Complete Genome Sequence of Caulobacter crescentus Siphophage Sansa. Genome Announc. 2015;3 (5):. doi: 10.1128/genomeA.01131-15. PubMed PMID:26450723 PubMed Central PMC4599082.
  5. Solis, JA, Farmer, NG, Cahill, JL, Rasche, ES, Kuty Everett, GF. Complete Genome Sequence of Bacillus megaterium Siphophage Silence. Genome Announc. 2015;3 (5):. doi: 10.1128/genomeA.01130-15. PubMed PMID:26450722 PubMed Central PMC4599081.
  6. Mijalis, EM, Lessor, LE, Cahill, JL, Rasche, ES, Kuty Everett, GF. Complete Genome Sequence of Klebsiella pneumoniae Carbapenemase-Producing K. pneumoniae Myophage Miro. Genome Announc. 2015;3 (5):. doi: 10.1128/genomeA.01137-15. PubMed PMID:26430050 PubMed Central PMC4591322.
  7. Provasek, VE, Lessor, LE, Cahill, JL, Rasche, ES, Kuty Everett, GF. Complete Genome Sequence of Carbapenemase-Producing Klebsiella pneumoniae Myophage Matisse. Genome Announc. 2015;3 (5):. doi: 10.1128/genomeA.01136-15. PubMed PMID:26430049 PubMed Central PMC4591321.
  8. Wilder, JN, Lancaster, JC, Cahill, JL, Rasche, ES, Kuty Everett, GF. Complete Genome Sequence of Enterotoxigenic Escherichia coli Myophage Murica. Genome Announc. 2015;3 (5):. doi: 10.1128/genomeA.01135-15. PubMed PMID:26430048 PubMed Central PMC4591320.
  9. Bernal, CL, Berkowitz, VE, Cahill, JL, Rasche, ES, Kuty Everett, GF. Complete Genome Sequence of Citrobacter freundii Myophage Michonne. Genome Announc. 2015;3 (5):. doi: 10.1128/genomeA.01134-15. PubMed PMID:26430047 PubMed Central PMC4591319.
  10. LeSage, KC, Hargrove, EC, Cahill, JL, Rasche, ES, Kuty Everett, GF. Complete Genome Sequence of Citrobacter freundii Myophage Merlin. Genome Announc. 2015;3 (5):. doi: 10.1128/genomeA.01133-15. PubMed PMID:26430046 PubMed Central PMC4591318.
  11. Sloan, JM, Keene, JL, Cahill, JL, Rasche, ES, Kuty Everett, GF. Complete Genome Sequence of Caulobacter crescentus Siphophage Seuss. Genome Announc. 2015;3 (5):. doi: 10.1128/genomeA.01132-15. PubMed PMID:26430045 PubMed Central PMC4591317.
  12. Nguyen, DT, Lessor, LE, Cahill, JL, Rasche, ES, Kuty Everett, GF. Complete Genome Sequence of Klebsiella pneumoniae Carbapenemase-Producing K. pneumoniae Siphophage Sushi. Genome Announc. 2015;3 (5):. doi: 10.1128/genomeA.00994-15. PubMed PMID:26337889 PubMed Central PMC4559738.
  13. Burgos, RW, Mash, SJ, Cahill, JL, Rasche, ES, Kuty Everett, GF. Complete Genome Sequence of Bacillus megaterium Podophage Pavlov. Genome Announc. 2015;3 (5):. doi: 10.1128/genomeA.00993-15. PubMed PMID:26337888 PubMed Central PMC4559737.
  14. Brizendine, AM, Rousseau, S, Hernandez, AC, Kuty Everett, GF. Complete Genome Sequence of Bacillus megaterium Siphophage Stahl. Genome Announc. 2015;3 (4):. doi: 10.1128/genomeA.00857-15. PubMed PMID:26251491 PubMed Central PMC4541283.
  15. Lee, SS, Kongari, RR, Hernandez, AC, Kuty Everett, GF. Complete Genome Sequence of Bacillus megaterium Siphophage Stills. Genome Announc. 2015;3 (4):. doi: 10.1128/genomeA.00855-15. PubMed PMID:26251490 PubMed Central PMC4541274.
  16. Hargrove, EC, Lopez, MS, Hernandez, AC, Kuty Everett, GF. Complete Genome Sequence of Bacillus megaterium Podophage Palmer. Genome Announc. 2015;3 (3):. doi: 10.1128/genomeA.00358-15. PubMed PMID:25953175 PubMed Central PMC4424291.
  17. Tolen, TN, Xie, Y, Hernandez, AC, Kuty Everett, GF. Complete Genome Sequence of Salmonella enterica Serovar Typhimurium Myophage Mushroom. Genome Announc. 2015;3 (2):. doi: 10.1128/genomeA.00154-15. PubMed PMID:25858827 PubMed Central PMC4392139.
  18. Piya, D, Xie, Y, Hernandez Morales, AC, Kuty Everett, GF. Complete Genome Sequence of Salmonella enterica Serovar Typhimurium Siphophage Shivani. Genome Announc. 2015;3 (1):. doi: 10.1128/genomeA.01443-14. PubMed PMID:25720685 PubMed Central PMC4342426.
  19. Doan, DP, Lessor, LE, Hernandez, AC, Kuty Everett, GF. Complete Genome Sequence of Enterotoxigenic Escherichia coli Siphophage Seurat. Genome Announc. 2015;3 (1):. doi: 10.1128/genomeA.00044-15. PubMed PMID:25720682 PubMed Central PMC4342423.
  20. Grover, JM, Luna, AJ, Wood, TL, Chamakura, KR, Kuty Everett, GF. Complete Genome of Salmonella enterica Serovar Typhimurium T5-Like Siphophage Stitch. Genome Announc. 2015;3 (1):. doi: 10.1128/genomeA.01435-14. PubMed PMID:25657270 PubMed Central PMC4319617.
  21. Shaw, JP, Aviles Medina, CA, Chen, Y, Luna, AJ, Hernandez, AC, Kuty Everett, GF et al.. Complete Genome of Citrobacter freundii Siphophage Stevie. Genome Announc. 2015;3 (1):. doi: 10.1128/genomeA.01434-14. PubMed PMID:25657269 PubMed Central PMC4319613.
  22. Ladzekpo, TN, DeCrescenzo, AJ, Hernandez, AC, Kuty Everett, GF. Complete Genome of Bacillus megaterium Podophage Pookie. Genome Announc. 2015;3 (1):. doi: 10.1128/genomeA.01432-14. PubMed PMID:25635030 PubMed Central PMC4319501.
  23. Patel, RS, Lessor, LE, Hernandez, AC, Kuty Everett, GF. Complete Genome Sequence of Enterotoxigenic Escherichia coli N4-Like Podophage Pollock. Genome Announc. 2015;3 (1):. doi: 10.1128/genomeA.01431-14. PubMed PMID:25635029 PubMed Central PMC4319500.
  24. Snowden, JD, Vega Gonzalez, AE, Maroun, JW, Hernandez, AC, Kuty Everett, GF. Complete Genome of Bacillus megaterium Podophage Pascal. Genome Announc. 2015;3 (1):. doi: 10.1128/genomeA.01429-14. PubMed PMID:25635028 PubMed Central PMC4319499.
  25. Edwards, GB, Luna, AJ, Hernandez, AC, Kuty Everett, GF. Complete Genome Sequence of Citrobacter freundii Myophage Moon. Genome Announc. 2015;3 (1):. doi: 10.1128/genomeA.01427-14. PubMed PMID:25635027 PubMed Central PMC4319498.
  26. Nguyen, QT, Luna, AJ, Hernandez, AC, Kuty Everett, GF. Complete Genome Sequence of Citrobacter freundii Myophage Moogle. Genome Announc. 2015;3 (1):. doi: 10.1128/genomeA.01426-14. PubMed PMID:25635026 PubMed Central PMC4319497.
  27. Cadungog, JN, Khatemi, BE, Hernandez, AC, Kuty Everett, GF. Complete Genome Sequence of Bacillus megaterium Myophage Moonbeam. Genome Announc. 2015;3 (1):. doi: 10.1128/genomeA.01428-14. PubMed PMID:25593264 PubMed Central PMC4299906.
  28. Hwang, K, Luna, AJ, Hernandez, AC, Kuty Everett, GF. Complete Genome Sequence of Citrobacter freundii Myophage Miller. Genome Announc. 2015;3 (1):. doi: 10.1128/genomeA.01425-14. PubMed PMID:25593263 PubMed Central PMC4299905.
  29. Lancaster, JC, Hodde, MK, Hernandez, AC, Kuty Everett, GF. Complete Genome Sequence of Bacillus megaterium Myophage Mater. Genome Announc. 2015;3 (1):. doi: 10.1128/genomeA.01424-14. PubMed PMID:25593262 PubMed Central PMC4299904.
  30. Lopez, MS, Hodde, MK, Chamakura, KR, Kuty Everett, GF. Complete Genome of Bacillus megaterium Podophage Page. Genome Announc. 2014;2 (2):. doi: 10.1128/genomeA.00332-14. PubMed PMID:24744341 PubMed Central PMC3990757.
  31. Ritz, MP, Perl, AL, Colquhoun, JM, Chamakura, KR, Kuty Everett, GF. Complete Genome of Bacillus subtilis Myophage CampHawk. Genome Announc. 2013;1 (6):. doi: 10.1128/genomeA.00984-13. PubMed PMID:24356825 PubMed Central PMC3868849.
  32. Tatsch, CO, Wood, TL, Chamakura, KR, Kuty Everett, GF. Complete Genome of Salmonella enterica Serovar Typhimurium Myophage Maynard. Genome Announc. 2013;1 (6):. doi: 10.1128/genomeA.00866-13. PubMed PMID:24356822 PubMed Central PMC3868846.
  33. Decrescenzo, AJ, Ritter, MA, Chamakura, KR, Kuty Everett, GF. Complete Genome of Bacillus megaterium Siphophage Slash. Genome Announc. 2013;1 (6):. doi: 10.1128/genomeA.00862-13. PubMed PMID:24336363 PubMed Central PMC3861416.
  34. Luna, AJ, Wood, TL, Chamakura, KR, Kuty Everett, GF. Complete Genome of Salmonella enterica Serovar Enteritidis Myophage Marshall. Genome Announc. 2013;1 (6):. doi: 10.1128/genomeA.00867-13. PubMed PMID:24309732 PubMed Central PMC3853055.
  35. Kongari, RR, Yao, GW, Chamakura, KR, Kuty Everett, GF. Complete Genome of Clavibacter michiganensis subsp. sepedonicusis Siphophage CN1A. Genome Announc. 2013;1 (6):. doi: 10.1128/genomeA.00865-13. PubMed PMID:24309731 PubMed Central PMC3853054.
  36. Hastings, WJ, Ritter, MA, Chamakura, KR, Kuty Everett, GF. Complete Genome of Bacillus megaterium Siphophage Staley. Genome Announc. 2013;1 (6):. doi: 10.1128/genomeA.00864-13. PubMed PMID:24309730 PubMed Central PMC3853053.
  37. Maroun, JW, Whitcher, KJ, Chamakura, KR, Kuty Everett, GF. Complete Genome of Bacillus thuringiensis Myophage Spock. Genome Announc. 2013;1 (6):. doi: 10.1128/genomeA.00863-13. PubMed PMID:24309729 PubMed Central PMC3853052.
  38. Still, EL, Riggi, CF, Chamakura, KR, Kuty Everett, GF. Complete Genome of Bacillus pumilus Siphophage Riggi. Genome Announc. 2013;1 (6):. doi: 10.1128/genomeA.00861-13. PubMed PMID:24309728 PubMed Central PMC3853051.
  39. Khatemi, BE, Chung On, CC, Chamakura, KR, Kuty Everett, GF. Complete Genome of Bacillus megaterium Podophage Pony. Genome Announc. 2013;1 (6):. doi: 10.1128/genomeA.00860-13. PubMed PMID:24309727 PubMed Central PMC3853050.
  40. Miller, SY, Colquhoun, JM, Perl, AL, Chamakura, KR, Kuty Everett, GF. Complete Genome of Bacillus subtilis Myophage Grass. Genome Announc. 2013;1 (6):. doi: 10.1128/genomeA.00857-13. PubMed PMID:24309726 PubMed Central PMC3853049.
  41. Matthew, SP, Decker, SL, Chamakura, KR, Kuty Everett, GF. Complete Genome of Bacillus pumilus Siphophage Glittering. Genome Announc. 2013;1 (6):. doi: 10.1128/genomeA.00856-13. PubMed PMID:24309725 PubMed Central PMC3853048.
  42. Mash, SJ, Minahan, NT, Chamakura, KR, Kuty Everett, GF. Complete Genome of Bacillus pumilus Siphophage Blastoid. Genome Announc. 2013;1 (6):. doi: 10.1128/genomeA.00854-13. PubMed PMID:24309724 PubMed Central PMC3853047.
  43. Ting, JH, Smyth, TB, Chamakura, KR, Kuty Everett, GF. Complete Genome of Bacillus thuringiensis Myophage BigBertha. Genome Announc. 2013;1 (6):. doi: 10.1128/genomeA.00853-13. PubMed PMID:24309723 PubMed Central PMC3853046.
  44. Farmer, NG, Wood, TL, Chamakura, KR, Kuty Everett, GF. Complete Genome of Acinetobacter baumannii N4-Like Podophage Presley. Genome Announc. 2013;1 (6):. doi: 10.1128/genomeA.00852-13. PubMed PMID:24309722 PubMed Central PMC3853045.
  45. Mumm, IP, Wood, TL, Chamakura, KR, Kuty Everett, GF. Complete Genome of Acinetobacter baumannii Podophage Petty. Genome Announc. 2013;1 (6):. doi: 10.1128/genomeA.00850-13. PubMed PMID:24309721 PubMed Central PMC3853044.
Search PubMed

Selected Publications by CPT Faculty

Jason Gill (Assistant Professor, Animal Science)

The Caulobacter crescentus phage phiCbK: genomics of a canonical phage. Gill JJ, Berry JD, Russell WK, Lessor L, Escobar Garcia DA, Hernandez D, Kane A, Keene J, Maddox M, Martin R, Mohan S, Thorn AM, Russell DH, Young R. BMC Genomics. 2012 Oct 10;13(1):542.

Genomes and characterization of phages Bcep22 and BcepIL02, founders of a novel phage type in Burkholderia cenocepacia.  Gill JJ, Summer EJ, Russell WK, Cologna SM, Carlile TM, Fuller AC, Kitsopoulos K, Mebane LM, Parkinson BN, Sullivan D, Carmody LA, Gonzalez CF, LiPuma JJ, Young R.  J Bacteriol. 2011 Oct;193(19):5300-13

Phage choice, isolation, and preparation for phage therapy.  Gill JJ, Hyman P.  Curr Pharm Biotechnol. 2010 Jan;11(1):2-14.

 

Carlos Gonzalez (Professor, Plant Microbiology and Pathology)

Control of Pierce’s Disease by Phage. Das M, Bhowmick TS, Ahern SJ, Young R, Gonzalez CF. PLoS One. 2015 Jun 24;10(6):e0128902. doi: 10.1371/journal.pone.0128902. eCollection 2015.

Characterization of novel virulent broad-host-range phages of Xylella fastidiosa and Xanthomonas.  Ahern SJ, Das M, Bohowmick TS, Young R, Gonzalez CF. J Bacteriol. 2014 Jan; 196(2):459-71. doi: 10:1128/JB 01080-13. Epub 2013 Nov 8.

Genome and characterization of phages Bcep22 and BcepIL02, founders of a novel phage type in Burkholderia cenocepacia.  Gill JJ, Summer EJ, Russell WK, Cologna SM, Carlile TM, Fuller AC, Kitsopoulos K, Mebane LM, Parkinson BN, Sullivan D, Carmody LA, Gonzalez CF, LiPuma JJ, Young R.  J Bacteriol 2011 Oct; 193(19):5300-13. doi: 10.1128/JB 05287-11. Epub 2011 Jul 29.

Efficacy of bacteriophage therapy in a model of Burkholderia cenocepacia pulmonary infection.  Carmody LA, Gill JJ, Summer EJ, Sajjan US, Gonzalez CF, Young RF, LiPuma JJ.  J Infect Dis. 2010 Jan 15;201(2):264-71.

Genomic and biological analysis of phage Xfas53 and related prophages of Xylella fastidiosa. Summer EJ, Enderle CJ, Ahern SJ, Gill JJ, Torres CP, Appel DN, Black MC, Young R, Gonzalez CF. J Bacteriol. 2010 Jan;192(1):179-90.

Jennifer Herman (Assistant Professor, Biochemistry and Biophysics)

YodL and YisK Possess Shape-Modifying Activities That Are Suppressed by Mutations in Bacillus subtillis mreB and mbl.  Duan Y, Sperber AM, Herman JK.  J Bacteriol. 2016 Jul 12; 198(15)2074-88.

A DNA-binding protein defines the precise region of chromosome capture during Bacillus sporulation.  Miller AK, Brown EE, Mercado BT, Herman JK.  Mol Microbiol 2016 Jan; 99(1):111-22.

A Secreted Factor Coordinates Environmental Quality with Bacillus Development.  Ababneh QO, Tindall AJ, Herman JK.  PLoS One 2015 Dec 11; 10(12):e0144168. doi: 10.1271/journal.pone.0144168. eCollection 2015

CodY Regulates SigD Levels and Activity by Binding to Three Sites in the fla/che Operon.  Ababneh QO, Herman JK. J Bacteriol 2015 Sep; 197(18)2999-3006.

RelA inhibits Bacillus subtillis motility and chaining.  Ababneh QO, Herman JK. J Bacteriol. 2015 Jan 1; 197(1):128-37.

 

Jim Hu (Professor, Biochemistry and Biophysics)

 

Ry Young (Sadie Hatfield Professor,  Biochemistry and Biophysics;  joint Professor of Biology)

The spanin complex is essential for lambda lysis.  Berry J, Rajaure M, Pang T, Young R.  J Bacteriol. 2012 Oct;194(20):5667-74.

Protein determinants of phage T4 lysis inhibition. Moussa SH, Kuznetsov V, Tran TA, Sacchettini JC, Young R. Protein Sci. 2012 Apr;21(4):571-82.

Genomic and functional analyses of Rhodococcus equi phages ReqiPepy6, ReqiPoco6, ReqiPine5, and ReqiDocB7.  Summer EJ, Liu M, Gill JJ, Grant M, Chan-Cortes TN, Ferguson L, Janes C, Lange K, Bertoli M, Moore C, Orchard RC, Cohen ND, Young R.  Appl Environ Microbiol. 2011 Jan;77(2):669-83.

Lanying Zeng (Assistant Professor, Biochemistry and Biophysics)

The Global Reciprocal Reprogramming between Mycobacteriophage SWU1 and Mycobacterium Reveals the Molecular Strategy of Subversion and Promotion of Phage Infection.  Fan X, Duan X, Tong Y, Huang Q, Zhou M, Wang H, Zeng L, Young RF erd, Xie J.  Front Microbiol. 2016 Jan 28; 7:41.

Phage DNA dynamics in cells with different fates.  Shao Q, Hawkins A, Zeng L.  Biophys J. 2015 Apr 21; 108(8):2048-60.

Genomic and proteomic features of mycobacteriophage SWU1 isolated from China soil.  Fan X, Yan J, Xie L, Zeng L, Young RF 3rd, Xie J. Gene. 2015 Apr 25; 561(1):45-53. doi: 10.

Single-virus tracking reveals a spatial receptor-dependent search mechanism.  Rothenberg E, Sepúlveda LA, Skinner SO, Zeng L, Selvin PR, Golding I. Biophys J. Jun 22; 100(12):2875-82.

Decision making at a subcellular level determines the outcome of bacteriophage infection.  Zeng L, Skinner SQ, Zong C,  Sippy J, Feiss M, Golding I.  Cell 2010 May 14;141(4):682-91.

 

Junjie Zhang (Assistant Professor, Biochemistry and Biophysics)

Structures of the Carbon-Phosphorus Lyase Complex Reveal the Binding Mode of the NBD-like PhnK.  Yang K, Ren Z, Raushel FM, Zhang J. Structure. 2016 Jan 5; 24(1):37-42.

Structure of Ribosomal Silencing Factor Bound to Mycobacterium tuberculosis Ribosome.  Li X, Sun Q, Jiang C, Yang K, Hung LW, Zhang J, Sacchettini JC. Structure. 2015 Oct 6; 23(10): 1858-65.

Book chapters

antimicrobialscover250

Gill JJ, Young R. 2011. Therapeutic Applications of Phage Biology: History, Practice and Recommendations. InEmerging Trends in Antibacterial Discovery: Answering the Call to Arms, AA Miller and PF Miller, eds. Caister Academic Press, Norfolk, UK.

Gill JJ. 2010. Practical and Theoretical Considerations for the Use of Bacteriophages in Food Systems. In Bacteriophages in the Control of Food- and Waterborne Pathogens, PM Sabour and MW Griffiths, eds. ASM Press, Washington, DC, pp. 217-235.
Gill, JJ. 2008. Modeling Bacteriophage Therapy. In Bacteriophage Ecology: Population Growth, Evolution, and Impact of Bacterial Viruses, ST Abedon, ed. Cambridge University Press, Cambridge, UK, pp. 439-464.