New year, new rounds of analysis! We just completed our regular updates to BLAST databases from NCBI and UniProt sources, as well as our local curated Canonical phages database. In addition, we updates to the latest InterProScan release. The versions now available on the CPT Galaxy are as listed below. For the nucleotide database: NTLearn More…
Structural Workflow updated
The CPT Galaxy hosts three standard workflows for phage annotation: the Structural and Functional annotation workflows, and the Comparative Genomics Workflow. In preparation for another round of genome annotation with BICH464 students, these workhorses have been polished up and will be released as their first 2021 versions. * Structural Workflow Workflow name: PAP Structural WorkflowLearn More…
New tool: rho-dependent terminator prediction
Stop that transcription! In bacteria, transcription termination can occur by the Rho-independent and Rho-dependent mechanisms. When annotating new phage genomes, the CPT has traditionally focused on identifying likely Rho-independent signals using the TransTermHP tool. Now, we have expanded the ability to look for rho-dependent transcription termination signals in CPT Galaxy with the tool published byLearn More…