The CPT Galaxy hosts various standard tools and workflows for phage annotation. Below, we highlight a few workflows built and shared among our users for their specific analysis needs. Maybe they will be useful to you as well. * Structural workflow for existing organism Workflow name: Modified PAP Structural Workflow v.2020.06 for updating existing organismPurpose:Learn More…
New tool: ProphET for prophage prediction
Looking for prophages in bacterial genomes? We added the prophage estimation tool ProphET described by Reis-Cunha et al. to CPT Galaxy. The tool uses similarity to a database of prophage genes and calculations of density and boundaries to make its determination. To use ProphET in Galaxy, users need to supply a matched bacterial genome inLearn More…
New Tool: Collapse Collection converts to single datasets
Data stuck in a dataset collection or list when you need it as a single dataset? When you have a history entry in a ‘Collection’, those files can be extracted as single history entries using the Collapse Collections into a single dataset tool. Galaxy was developed as a platform to handle large datasets. The abilityLearn More…