Do you want to compare a large number of phage genomes by dot plot? In the Comparative Genomics workflow, we regularly do genome-wide nucleotide comparisons between 5-10 or more genomes. The dot plot generated by MIST is a primary output from that analysis. Some improvements to labeling placement have been made to optimize readability whenLearn More…
Galaxy Updates and Dev/Ops
Tool spotlight: Interrupted gene detection tool
The Interrupted genes detection tool, widely used as part of the Functional Annotation Workflow has been renamed (formerly called the Intron Detection tool) to reflect the broader applications for which it can be used. Though originally written to parse protein BLAST results and identify genes possibly interrupted by introns, repeated use demonstrated that this toolLearn More…
Tutorial materials updated
Noticed any changes around here recently? In the past few months, we have performed significant maintenance on the entire CPT Galaxy and Apollo ecosystems. In addition to updating the platforms to current community releases, many workflows and tools were modified to improve functionality and efficiency. To keep both seasoned and new users up to speedLearn More…