We have integrated a handy tool from https://multiqc.info/ into CPT Galaxy that allows aggregation of bioinformatic analyses into an HTML report output. The MultiQC tool is particularly useful in conjunction with FastQC when used on NGS data. Added by Cory Maughmer, the MultiQC tool can be found under CPT: Genomic Overview. Please email the supportLearn More…
Software
Tool Spotlight: MIST dot plots
Do you want to compare a large number of phage genomes by dot plot? In the Comparative Genomics workflow, we regularly do genome-wide nucleotide comparisons between 5-10 or more genomes. The dot plot generated by MIST is a primary output from that analysis. Some improvements to labeling placement have been made to optimize readability whenLearn More…
Tool spotlight: Interrupted gene detection tool
The Interrupted genes detection tool, widely used as part of the Functional Annotation Workflow has been renamed (formerly called the Intron Detection tool) to reflect the broader applications for which it can be used. Though originally written to parse protein BLAST results and identify genes possibly interrupted by introns, repeated use demonstrated that this toolLearn More…