Draw detailed gene maps for your linear phage genome genbank files using Linear Genome Plot. This new tool has flexible options for genome display on a single or multiple lines with coloring feature shapes based on type (gene, regulatory, etc.) or name (such as product). Label source and placement are also set by the user.Learn More…
Software
Workflow update: Functional flow faster!
The BLAST jobs traditionally found in the PAP Functional Workflow have been tweaked. The BLASTp jobs were the reason that a functional flow took overnight to complete. As of PAP Functional Workflow v2020.07, BLASTp will no longer be run against Bacterial sequences in the NCBI nonredundant (nr) database. By removing BLASTp against all Bacteria (taxidLearn More…
Paper describing CPT Galaxy for phage annotation published
The CPT has been building the infrastructure and resources to be the world leaders in phage annotation using the open-source Galaxy and Apollo platforms since 2015. In our latest manuscript, published this week in PLOS Computational Biology, we describe in detail the tools and workflows that are the mainstays for all phage annotation efforts hereLearn More…