Another tRNA prediction tool has been added to the CPT Galaxy repertoire: tRNAScan-SE. In version 2.0, the default is set to use the bacterial model for prediction on any input nucleotide fasta.
Accompanying tRNAScan-SE is a format conversion script Convert tRNAscan-SE table to gff format, written in-house by Anthony Criscione, that allows this data to be displayed as an evidence track in Apollo. tRNAScan-SE is now added to the PAP Structural Workflow v2020.07, along with Aragorn.
To run as a stand-alone tool, tRNAScan-SE 2.0 tool can be found under CPT: Genomic Overview. Its accompanying conversion tool is under CPT: Format Conversion. Please email the support team if you have any questions!