Howdy Phage Galaxy Users! We’ve recently updated our Digestion Toolkit, originally built by our BICH491 student Stephen Crosby, to take advantage of the new plasmid visualization library angularplasmid. This was built into a small workflow which handles ligating all of the sequences in a fasta file with a 5′ adapter, a 3′ adapter, andLearn More…
Galaxy Tutorials
Codon Optimisation Now Available
The CPT wanted to include a Codon Optimisation tool in Galaxy, but none of the existing ones are open source or willing to release their source. So, we wrote our own! We were able to add some extra, nice features as a result of this. We have an extensive library of bacterial codon usage dataLearn More…
ClustalW MSA and Visualisations
The ClustalW alignment tool is now available in Galaxy, as are a way to easily visualise the resulting alignment. Start by loading up a fasta file of interest (or importing our example history) and running the ClustalW tool that’s available under “Fetch Alignments” Once you’ve loaded up the ClustalW tool, you’llLearn More…