The CPT Galaxy hosts three standard workflows for phage annotation: the Structural and Functional annotation workflows, and the Comparative Genomics Workflow. In preparation for another round of genome annotation with BICH464 students, these workhorses have been polished up and will be released as their first 2021 versions. * Structural Workflow Workflow name: PAP Structural WorkflowLearn More…
Galaxy Updates
New tool: rho-dependent terminator prediction
Stop that transcription! In bacteria, transcription termination can occur by the Rho-independent and Rho-dependent mechanisms. When annotating new phage genomes, the CPT has traditionally focused on identifying likely Rho-independent signals using the TransTermHP tool. Now, we have expanded the ability to look for rho-dependent transcription termination signals in CPT Galaxy with the tool published byLearn More…
Highlighting community workflows
The CPT Galaxy hosts various standard tools and workflows for phage annotation. Below, we highlight a few workflows built and shared among our users for their specific analysis needs. Maybe they will be useful to you as well. * Structural workflow for existing organism Workflow name: Modified PAP Structural Workflow v.2020.06 for updating existing organismPurpose:Learn More…