When in the final throes of polishing and proofreading a phage genome’s annotations for submission, you often notice small changes that need to be made. This usually requires back-tracking to an editable file format and can be particularly frustrating when changes get made in a file that cannot be back-converted. Our latest tool is thereLearn More…
Galaxy Updates and Dev/Ops
BLAST and InterPro databases updated
New year, new rounds of analysis! We just completed our regular updates to BLAST databases from NCBI and UniProt sources, as well as our local curated Canonical phages database. In addition, we updates to the latest InterProScan release. The versions now available on the CPT Galaxy are as listed below. For the nucleotide database: NTLearn More…
Structural Workflow updated
The CPT Galaxy hosts three standard workflows for phage annotation: the Structural and Functional annotation workflows, and the Comparative Genomics Workflow. In preparation for another round of genome annotation with BICH464 students, these workhorses have been polished up and will be released as their first 2021 versions. * Structural Workflow Workflow name: PAP Structural WorkflowLearn More…