The latest version of my JBrowse Galaxy wrapper (TAMU, Public) has been released! It features lots of exciting new features: Support for dataset collectionSupport for all coding tablesAdvanced styling options for colouring and colour coding your tracksMultiple file selections (easily select + style a whole group of tracks at once)Simplified tool interface (in places. MoreLearn More…
Software
Galaxy Tool News: Codon Optimizer, Gff3 Filters
Some exciting new tool updates; a couple of tools to help you filter GFF3 files in your analyses based on Shine Dalgarno sequences and “Phage Start Codons”, and an update to the CPT’s own Codon Optimizer Sometimes in your analyses you find yourself producing a gff3 file of naive gene calls, and have thousands ofLearn More…
Fasta Ligation and DNA Digestion Tools
Howdy Phage Galaxy Users! We’ve recently updated our Digestion Toolkit, originally built by our BICH491 student Stephen Crosby, to take advantage of the new plasmid visualization library angularplasmid. This was built into a small workflow which handles ligating all of the sequences in a fasta file with a 5′ adapter, a 3′ adapter, andLearn More…