The BLAST jobs traditionally found in the PAP Functional Workflow have been tweaked. The BLASTp jobs were the reason that a functional flow took overnight to complete. As of PAP Functional Workflow v2020.07, BLASTp will no longer be run against Bacterial sequences in the NCBI nonredundant (nr) database. By removing BLASTp against all Bacteria (taxidLearn More…
apollo
Paper describing CPT Galaxy for phage annotation published
The CPT has been building the infrastructure and resources to be the world leaders in phage annotation using the open-source Galaxy and Apollo platforms since 2015. In our latest manuscript, published this week in PLOS Computational Biology, we describe in detail the tools and workflows that are the mainstays for all phage annotation efforts hereLearn More…
CPT Galaxy Workflow Updates – October 2020
Howdy all! We have now released fully updated and tested workflows for the Structural and Functional workflows on CPT Galaxy, as well as the other Apollo bridge workflows for loading custom tracks. We have also updated our training material site to include the new UI for both Galaxy and Apollo. Please take a look hereLearn More…