Noticed any changes around here recently? In the past few months, we have performed significant maintenance on the entire CPT Galaxy and Apollo ecosystems. In addition to updating the platforms to current community releases, many workflows and tools were modified to improve functionality and efficiency.
To keep both seasoned and new users up to speed on how to perform standard annotation tasks, our training tutorials materials now reflect all the most recent changes. Check those tutorials out at https://cpt.tamu.edu/training-material/, especially the Structural & Functional Annotation and Comparative Genomics Workflows entries under Phage Annotation Pipeline.
One major difference will be encountered during annotation in Apollo: the way features are edited. Instead of a popup, users will make edits in the Annotations tab on the right. In addition, the display name in Apollo annotation track can be synced with gene feature with a new button. See the Annotation in Apollo tutorial for more information.
Have an idea for a useful tutorial that is not in the list? Put in your request with the Admin team.