- Server Upkeep and Maintenance: 9-10-2017 to 9-15-2017 September 11, 2017 - Required updates and upgrades will be performed on all CPT servers over the next week [Monday 9-11-17 through Friday 9-15-17]. Momentary interruptions to services may occur.
- New Tool: Genome Editor April 24, 2017 - In order to help people correct and finish their genomes, we’ve built a small tool to help edit genomes. It allows you add, remove, and re-arrange sequence. Once you’ve built up your new patchwork genome, the tool outputs the re-arranged genome and re-arranged features for you. First, you select an input fasta and gff3 fileLearn More...
- Galaxy Tool Issue Notice: NCBI EUtils, TMHMM, Blast XML to GFF3 March 14, 2017 - Howdy All, We’ve discovered and taken action regarding some issues in the CPT’s Galaxy tool suite. NCBI EUtils suite is currently disabled until we can get the upstream set of tools working. NCBI made some changes on their end, and the library we use to talk to NCBI has not updated to adjust to theseLearn More...
- Resolved: Maintenance: Galaxy + Apollo (2017-02-04) February 1, 2017 - Update (2017-02-04 16:03) We’ve completed all of the upgrades, as planned, ahead of schedule. The Galaxy Database, the Apollo Databases, and Apollo were all migrated to a safer location Apollo authentication has had been improved, usernames and password are no longer necessary for access. You will need to be logged in to Galaxy in orderLearn More...
- Maintenance: Server January 19, 2017 - We will be rebooting the frontend server, tomorrow morning (2017-01-20 10:00J). We expect the maintenance to last approximately 2 hours.
- Resolved. Maintenance: Galaxy (Monday, 2016-12-19) December 18, 2016 - Resolved: At 01.52 Z (1952 local time), the maintenance window was resolved. We have reverted to 16.07 due to a specific bug in the authentication method. Update: One sysadmin noticed a bug that had slipped through, going back into maintenance until this issue is resolved. Resolved: At 00.00 Z (1800 local time), the maintenance windowLearn More...
- Updated! Galaxy Blast Databases December 16, 2016 - Our Galaxy instance has a number of Blast databases built-in. Over the past few years we updated these once a year, usually in august. While this provided excellent stability and reliability of results, users found it lacking in the freshness of those results. Now, every two weeks all of our blast databases are updated. You willLearn More...
- CPT Blast Database Updates & Workflow Updates December 14, 2016 - In the coming weeks we will be updating the BLAST Databases that the CPT Maintains. We are working to add an automated job that will download a fresh blast database every two weeks. You will be able to see the status and progress of this job if you are curious about what we’re doing. AdditionallyLearn More...
- Resolved: Emergency Maintenance 2016-11-08 12.00-13.00J November 8, 2016 - Update Upgrades were completed succesfully, and all services should be back online as of now (30 minutes ahead of expected)! Original Today at noon local time (2016-11-08T18:00:00Z-2016-11-08T19:00:00Z) the CPT server will go down for maintenance. We are adding new RAM into the server which should alleviate many of the issues our users have been experiencingLearn More...
- Maintenance: Apollo (Thursday, 2016-11-10) November 8, 2016 - On Thursday (2016-11-10) Apollo will be down for an expected 3 hours for a migration process. This will ensure that our Apollo server is more resilient than ever and can withstand hardware failures on our end. The maintenance window is 1200-1500J (1800-2100Z) Email if you have any questions.